All modules for which code is available

• assemblerflow.assemblerflow
• assemblerflow.generator.components.annotation
• assemblerflow.generator.components.assembly
• assemblerflow.generator.components.assembly_processing
• assemblerflow.generator.components.distance_estimation
• assemblerflow.generator.components.downloads
• assemblerflow.generator.components.reads_quality_control
• assemblerflow.generator.engine
• assemblerflow.generator.error_handling
• assemblerflow.generator.pipeline_parser
• assemblerflow.generator.process
• assemblerflow.generator.process_details
• assemblerflow.templates.assembly_report
• assemblerflow.templates.fastqc
• assemblerflow.templates.fastqc_report
• assemblerflow.templates.integrity_coverage
• assemblerflow.templates.mapping2json
• assemblerflow.templates.mashdist2json
• assemblerflow.templates.pipeline_status
• assemblerflow.templates.process_abricate
• assemblerflow.templates.process_assembly_mapping
• assemblerflow.templates.spades
• assemblerflow.templates.trimmomatic
• assemblerflow.templates.trimmomatic_report