Assemblerflow
patlas_docs

Getting Started

  • Overview
  • Installation

User Guide

  • Basic Usage
  • Pipeline building
  • Pipeline configuration
  • Components

Developer Guide

  • General orientation
  • Process creation guidelines
  • Template creation guidelines
  • Dotfiles

Source API

  • assemblerflow package
    • Subpackages
      • assemblerflow.generator package
        • assemblerflow.generator.components package
        • Submodules
        • Module contents
      • assemblerflow.templates package
      • assemblerflow.tests package
    • Submodules
    • Module contents
Assemblerflow
  • Docs »
  • assemblerflow package »
  • assemblerflow.generator package
  • Edit on GitHub

assemblerflow.generator package¶

  • assemblerflow.generator.components package
    • Submodules
      • assemblerflow.generator.components.annotation module
      • assemblerflow.generator.components.assembly module
      • assemblerflow.generator.components.assembly_processing module
      • assemblerflow.generator.components.distance_estimation module
      • assemblerflow.generator.components.downloads module
      • assemblerflow.generator.components.mapping module
      • assemblerflow.generator.components.reads_quality_control module
    • Module contents

Submodules¶

  • assemblerflow.generator.engine module
  • assemblerflow.generator.error_handling module
  • assemblerflow.generator.header_skeleton module
  • assemblerflow.generator.pipeline_parser module
  • assemblerflow.generator.process module
  • assemblerflow.generator.process_details module

Module contents¶

Placeholder for Process creation docs

Next Previous

© Copyright 2018, Assemblerflow team. Revision 9e731a68.

Built with Sphinx using a theme provided by Read the Docs.