flowcraft.templates.mashscreen2json module


This module is intended to generate a json output for mash screen results that can be imported in pATLAS.

Expected input

The following variables are expected whether using NextFlow or the main() executor.

  • mash_output : String with the name of the mash screen output file.
    • e.g.: 'sortedMashScreenResults_SampleA.txt'

Code documentation