FlowCraft
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Getting Started

  • Overview
  • Installation
  • About

User Guide

  • Basic Usage
  • Pipeline building
  • Pipeline configuration
  • Pipeline inspection
  • Pipeline reports
  • Components

Developer Guide

  • General orientation
  • Process creation guidelines
  • Template creation guidelines
  • Recipe creation guidelines
  • Docker containers guidelines
  • Dotfiles
  • Pipeline reporting
  • Reports

Source API

  • flowcraft package
    • Subpackages
      • flowcraft.generator package
        • Subpackages
        • Submodules
        • Module contents
      • flowcraft.templates package
      • flowcraft.tests package
    • Submodules
    • Module contents
FlowCraft
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  • flowcraft package »
  • flowcraft.generator package
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flowcraft.generator package¶

Subpackages¶

  • flowcraft.generator.components package
    • Submodules
      • flowcraft.generator.components.annotation module
      • flowcraft.generator.components.assembly module
      • flowcraft.generator.components.assembly_processing module
      • flowcraft.generator.components.distance_estimation module
      • flowcraft.generator.components.downloads module
      • flowcraft.generator.components.metagenomics module
      • flowcraft.generator.components.mlst module
      • flowcraft.generator.components.patlas_mapping module
      • flowcraft.generator.components.reads_quality_control module
      • flowcraft.generator.components.typing module
    • Module contents

Submodules¶

  • flowcraft.generator.engine module
  • flowcraft.generator.error_handling module
  • flowcraft.generator.footer_skeleton module
  • flowcraft.generator.header_skeleton module
  • flowcraft.generator.inspect module
  • flowcraft.generator.pipeline_parser module
  • flowcraft.generator.process module
  • flowcraft.generator.process_details module
  • flowcraft.generator.recipe module

Module contents¶

Placeholder for Process creation docs

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