mlst

Purpose

Checks the ST of an assembly using mlst.

Note

Software page: https://github.com/tseemann/mlst

Input/Output type

  • Input type: Fasta
  • Output type: None

Note

The default input parameter for fasta data is --fasta.

Parameters

  • mlstSpecies: Specifiy the expected species for MLST.

Published results

  • results/annotation/mlst: Stores the results of the ST for each sample.

Published reports

None.

Default directives

  • container: ummidock/mlst

Advanced

Reports JSON

tableRow:
  • mlst: Predicted species.

expectedSpecies: Name of the expected species.

species: Name of inferred species.