midas_species

Purpose

This component performs MIDAS to assign taxonomic labels fro species to short DNA sequences, usually obtained through metagenomic studies.

Note

Software page: https://github.com/snayfach/MIDAS

Input/Output type

  • Input type: FastQ
  • Output type: None

Note

The default input parameter for fastq data is --fastq.

Parameters

  • midasDB: Specifies MIDAS database. Default: /MidasDB/midas_db_v1.2

Published results

  • results/taxonomy/midas: Stores the results of the screening for each sample.

Published reports

None.

Default directives

  • container: flowcraft/midas
  • version: 1.3.2-0.1
  • memory: 2.Gb*task.attempt
  • cpus: 3