mash_sketch_fasta

Purpose

This component performs mash sketch for fasta input files.

Note

  • MASH documentation can be found here.

Input/Output type

  • Input type: fasta
  • Output type: msh

Parameters

  • kmerSize: Parameter to set the kmer size for hashing. Default: 21. Default: false.
  • sketchSize: Parameter to set the number of hashes per sketch. Default: 1000.

Published results

None.

Published reports

None.

Default directives

  • mashSketchFasta:
    • container: flowcraft/mash-patlas
    • version: 1.6.0-1