sistr¶
Purpose¶
Sistr (Salmonella In Silico Typing Resource) is a software for Serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.
Note
Software page: https://github.com/peterk87/sistr_cmd
Input/Output type¶
- Input type:
Fasta
- Output type: None
Note
The default input parameter for fasta data is --fasta
.
Parameters¶
None
Published results¶
results/typing/sistr
: Stores the results of sistr in a tab file
Published reports¶
None.
Default directives¶
cpus
: 4memory
: 4GBcontainer
: ummidock/sistr_cmdversion
: 1.0.2