skesa¶
Purpose¶
This components assembles paired-end FastQ files using the Skesa assembler.
Input/Output type¶
- Input type:
FastQ
- Output type:
Fasta
Note
The default input parameter for FastQ data is --fastq
. You can change
the --fastq
parameter default pattern (fastq/*_{1,2}.*
) according
to input file names (e.g.: --fastq "path/to/fastq/*R{1,2}.*"
).
Parameters¶
None.
Published results¶
results/assembly/skesa
: Stores the fasta assemblies for each sample.
Published reports¶
None.
Default directives¶
cpus
: 4memory
: 5GB (dynamically increased on retry)container
: flowcraft/skesaversion
: 2.3.0-1scratch
: true