mlst¶
Purpose¶
Checks the ST of an assembly using mlst.
Note
Software page: https://github.com/tseemann/mlst
Input/Output type¶
- Input type:
Fasta
- Output type: None
Note
The default input parameter for fasta data is --fasta
.
Parameters¶
mlstSpecies
: Specifiy the expected species for MLST.
Published results¶
results/annotation/mlst
: Stores the results of the ST for each sample.
Published reports¶
None.
Default directives¶
container
: ummidock/mlst