midas_species¶
Purpose¶
This component performs MIDAS to assign taxonomic labels fro species to short DNA sequences, usually obtained through metagenomic studies.
Note
Software page: https://github.com/snayfach/MIDAS
Input/Output type¶
- Input type:
FastQ
- Output type: None
Note
The default input parameter for fastq data is --fastq
.
Parameters¶
midasDB
: Specifies MIDAS database. Default: /MidasDB/midas_db_v1.2
Published results¶
results/taxonomy/midas
: Stores the results of the screening for each sample.
Published reports¶
None.
Default directives¶
container
: flowcraft/midasversion
: 1.3.2-0.1memory
: 2.Gb*task.attemptcpus
: 3