filter_poly¶
Purpose¶
This component removes low complexity sequence from read data using PrinSeq.
Note
Software page: http://prinseq.sourceforge.net/
Input/Output type¶
- Input type:
FastQ
- Output type: ``FastQ`
Note
The default input parameter for fastq data is --fastq
.
Parameters¶
adapter
: Pattern to filter the reads. Please separate parameter values with a space- and separate new parameter sets with semicolon (;). Parameters are defined by two values: the pattern (any combination of the letters ATCGN), and the number of repeats or percentage of occurence. Default: A 50%; T 50%; N 50%
Published results¶
None.
Published reports¶
None.
Default directives¶
container
: flowcraft/prinseqversion
: 0.20.4-1memory
: 4.GB * task.attemptcpus
: 1