card_rgi¶
Purpose¶
This component performs anti-microbial gene screening using CARD rgi. It uses data from CARD database.
Note
Software page: https://github.com/arpcard/rgi
Input/Output type¶
- Input type:
Fasta
- Output type: None
Note
The default input parameter for fasta data is --fasta
.
Parameters¶
alignmentTool
: Specifies the alignment tool. Options: DIAMOND or BLAST
Published results¶
results/annotation/card_rgi
: Stores the results of the screening for each sample.
Published reports¶
None.
Default directives¶
container
: flowcraft/card_rgiversion
: 4.0.2-0.1