abricate¶
Purpose¶
This component performs anti-microbial gene screening using abricate. It
includes the default databases plus the virulencefinder
database.
Note
Software page: https://github.com/tseemann/abricate
Input/Output type¶
- Input type:
Fasta
- Output type: None
Note
The default input parameter for fasta data is --fasta
.
Parameters¶
abricateDatabases
: Specify the databases for abricate.
Published results¶
results/annotation/abricate
: Stores the results of the abricate screening for each sample and for each specified database.
Published reports¶
None.
Default directives¶
abricate
:container
: ummidock/abricateversion
: 0.8.0-1
process_assembly_mapping
:container
: ummidock/abricateversion
: 0.8.0-1